Proteomics in Biology, Part A

<p>1. An Easy and Fast Protocol for Affinity Bead-Based Protein Enrichment and Storage of Proteome Samples<br>A. Otto, S. Maaß, F. Bonn, K. Büttner and D. Becher<br>2. Filter Aided Sample Preparation the Versatile and Efficient Method for Proteomic Analysis<br>J.R. Wiśniewski<br>3. An Overview of Advanced SILAC Labeling Strategies for Quantitative Proteomics<br>F. Terzi and S. Cambridge<br>4. Label Free and Standard Free Absolute Quantitative Proteomics Using the ‘Total Protein’ and ‘Proteomic Ruler’ Approaches<br>J.R. Wiśniewski<br>5. Separation of Two Distinct O-Glycoforms of Human IgA1 by Serial Lectin-Chromatography Followed by Mass Spectrometry O-Glycan Analysis<br>S. Lehoux and T. Ju<br>6. Monitoring Protein Synthesis in Caenorhabditis Elegans Using SILAC<br>M. Miyagi<br>7. Identification of Novel Macropinocytosing Human Antibodies by Phage Display and High-Content Analysis<br>K.D. Ha, S.M. Bidlingmaier, Y. Su, N.-K. Lee and B. Liu<br>8. Beyond the Natural Proteome: Non-Degenerate Saturation Mutagenesis - Methodologies and Advantages<br>M.M. Ferreira Amaral, L. Frigotto and A.V. Hine<br>9. WGCNA Application to Proteomic and Metabolomic Data Analysis<br>G. Pei, L. Chen and W. Zhang<br>10. A Protocol for Large-Scale Proteomic Analysis of Microdissected Formalin Fixed and Paraffin Embedded Tissue<br>P. Ostasiewicz and J.R. Wiśniewski<br>11. Body Fluid Degradomics and Characterization of Basic N-Terminome<br>F. Sabino, O. Hermes and U. auf dem Keller<br>12. Reannotation of Genomes by Means of Proteomics Data<br>J. Armengaud<br>13. Proteogenomics: Recycling Public Data to Improve Genome Annotations<br>A. McAfee and L.J. Foster<br>14. Targeted in-Depth Quantification of Signaling Using Label-Free Mass Spectrometry<br>P.R. Cutillas<br>15. Biotin Switch Assays for Quantitation of Reversible Cysteine Oxidation<br>R. Li and J. Kast<br>16. Application of a Thioredoxin Trapping Mutant for Analysis of the Cellular Nitrosoproteome<br>M. Benhar<br>17. Combining Click-Chemistry Based Proteomics with Dox-Inducible Gene Expression<br>J. Gebert, M. Schnölzer, U. Warnken and J. Kopitz<br>18. Analysis of the Proteome of Hair-Cell Stereocilia by Mass Spectrometry<br>J.F. Krey, P.A. Wilmarth, L.L. David and P.G. Barr-Gillespie<br>19. Proteomic Analysis of Metabolic Responses to Biofuels and Chemicals in Photosynthetic Cyanobacteria<br>T. Sun, L. Chen and W. Zhang<br>20. Deep Profiling of Proteome and Phosphoproteome by Isobaric Labeling, Extensive Liquid Chromatography and Mass Spectrometry<br>B. Bai, H. Tan, V.R. Pagala, A.A. High, V.P. Ichhaporia, L. Hendershot and J. Peng<br>21. Glycoprotein Enrichment Analytical Techniques: Advantages and Disadvantages<br>R. Zhu, L. Zacharias, K.M. Wooding, W. Peng and Y. Mechref<br>22. Quantitative Glycomics: A Combined Analytical and Bioinformatics Approach<br>L. Veillon, S. Zhou and Y. Mechref</p>