Tumor Immunology and Immunotherapy - Integrated Methods Part B

<p>1. A comprehensive approach to gene expression profiling in immune cells<br>Sabrina Carpentier, François Romagné and Eric Vivier<br>2. DIY: Visualizing the immune landscape of tumors using transcriptome and methylome data<br>Steven F. Gameiro, Farhad Ghasemi, John W. Barrett, James Koropatnick, Anthony C. Nichols, Joe S. Mymryk and Saman Maleki Vareki<br>3. Using epigenetic data to estimate immune composition in admixed samples<br>Ankur Chakravarthy and Daniel De Carvalho<br>4. Metabolomic approaches to study the tumor microenvironment<br>Giuseppe Astarita, Suraj Dhungana, Bindesh Shrestha and Evagelia C. Laiakis<br>5. Immunoscore assay for the immune classification of solid tumors: Technical aspects, improvements and clinical perspectives<br>Florence Marliot, Lucie Lafontaine and Jérôme Galon<br>6. Transforming growth factor beta (TGF-β) activity in immune-oncology studies<br>Gabriel Gallo-Oller, Marianna Di Scala, Fernando Aranda and Javier Dotor<br>7. Isolation of DNA from exosomes<br>Sheila Spada, Nils Rudqvist and Erik Wennerberg<br>8. Decoding cancer cell death-driven immune cell recruitment: An in vivo method for site-of-vaccination analyses<br>Shentong Fang, Patrizia Agostinis, Petri Salven and Abhishek D. Garg<br>9. Computational methods in tumor immunology<br>Bhavneet Bhinder and Olivier Elemento<br>10. Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseq<br>Christina Plattner, Francesca Finotello and Dietmar Rieder<br>11. Concurrent in situ analysis of point mutations and immune infiltrate in FFPE cancers<br>Ann-Marie Baker and Trevor A. Graham<br>12. RNA interference screening methods to identify proliferation determinants and mechanisms of resistance to immune attack<br>Yong-Wei Zhang, Rochelle E. Nasto, Sandra A. Jablonski, Ilya G. Serebriiskii, Rishi Surana, Joseph Murray, Michael Johnson, Rebecca B. Riggins, Robert Clarke, Erica A. Golemis and <br>Louis M. Weiner<br>13. An altered miTRAP method for miRNA affinity purification with its pros and cons<br>Simon Jasinski-Bergner, Christoforos Vaxevanis, Nadine Heimer, Maria-Filothei Lazaridou, Michael Friedrich and Barbara Seliger<br>14. Identification of immunomodulatory RNA-binding proteins in tumors<br>Michael Friedrich, Maria-Filothei Lazaridou, Jette Rahn, Christoforos Vaxevanis, Nadine Heimer, Simon Jasinski-Bergner and Barbara Seliger<br>15. Techniques for the generation of humanized mouse models for immuno-oncology<br>Chun I. Yu, Florentina Marches, Te-Chia Wu, Jan Martinek and Karolina Palucka</p>