Modeling Transcriptional Regulation

Co-expression Networks in Predicting Transcriptional Gene Regulation.-&nbsp;Inference of Gene Coexpression Networks from Bulk-based RNA-Sequencing Data.-&nbsp;Genomic Footprinting Analyses from DNase-seq data to Construct Gene Regulatory Networks.-&nbsp;Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap For Analysis, Visualization, and Key Gene Identification.-&nbsp;Dynamic Modeling of Transcriptional Gene Regulatory Networks-&nbsp;Mathematical Programming for Modelling Expression of a Gene using Gurobi Optimizer to Identify its Transcriptional Regulators.-&nbsp;Multiscale Modeling of Cross-Regulatory Transcript and Protein Influences.-&nbsp;Biological Network Mining.-&nbsp;Identification of Gene Regulatory Networks from Single-Cell Expression Data-&nbsp;Inference of Gene Regulatory Network From Single-Cell Transcriptomic Data using pySCENIC.-&nbsp;Modeling Immune Dynamics in Plants using JIMENA-package.-&nbsp;Dynamic Regulatory Event Mining by iDREM in Large Scale Multi-Omics Datasets during Biotic and Abiotic Stress in Plants.-&nbsp;A semi-in vivo Transcriptional Assay to Dissect Plant Defense Regulatory Modules.-&nbsp;Assessing Global Circadian Rhythm through Single-Time-Point Transcriptomic Analysis.-&nbsp;High-throughput Targeted Transcriptional Profiling of Defense Genes using RNA-mediated oligonucleotide Annealing, Selection, and Ligation with next-generation sequencing in Arabidopsi.-&nbsp;Rapid Validation of Transcriptional Enhancers Using a Transient Reporter Assay.-&nbsp;Computational Identification of ceRNA and Reconstruction of ceRNA Regulatory Network Based on RNA-seq and Small RNA-seq Data in Plants.-&nbsp;In Silico Prediction for ncRNAs in Prokaryotes.-&nbsp;Mathematical Linear Programming to Model MicroRNAs-Mediated Gene Regulation Using Gurobi Optimizer.&nbsp;<p><br></p>