Plant Systems Biology

Plant Systems Biology: Lessons from Teaching.- How to Use the TDCor Algorithm to Infer Gene Regulatory Networks from Time Series Transcriptomic Data.- Gene Regulatory Network Investigation Using Ordinary Differential Equations.- Gene Regulatory Network Dynamical Logical Models for Plant Development.- Post-Embryonic Organogenesis in Plants: Experimental Induction of New Shoot and Root Organs.- NanoIndentation, an ImageJ Plugin for the Quantification of Cell Mechanics.- Introduction to Computational Modeling of Multicellular Tissues.- The Virtual Root: Mathematical Modelling of Auxin Transport in the Arabidopsis Root Tip using the Open Source Software SimuPlant.- Modeling Plant Tissue Development using VirtualLeaf.- Identifying Developmental Patterns in Structured Plant Phenotyping Data.- Putting Plant Roots at Light: Temporal Imaging of Plant Roots and Soil Water with a Light Transmission Technique for Linking Water and Root Observations to Soil-Plant Models.- RACINE2.2: A Software Application for Processing and Mapping Spatial Distribution of Root Length Density and Potential Root Extraction Ratio from Root Counts on Trench Profiles.- Investigating Soil-Root Interactions with the Numerical Model R-SWMS.- How to Define the Appropriate Spatial Resolution of Root Segments When Solving Water Flow in Root System Hydraulic Architectures?.- Simulating Crop Root Systems using OpenSimRoot.- Future Challenges in Plant Systems Biology.- Plant Systems Biology: Further Reading and Resources.