Stem Cell Transcriptional Networks

Inferring Gene Regulatory Networks in Stem Cells: Methods and Applications.- Computational network analysis for defining transcriptional programs.- Deep Learning Protocols for Predicting Drug Mechanism of Action and Drug–Target Interactions.- Topic-Driven Bibliometrics and Trend Intelligence for Stem Cell and Cancer Research.- TORC: Target-Oriented Reference Construction for supervised cell-type identification in scRNA-seq.- A standardized protocol for generating iPSC-derived human microglia for functional genomic assays.- A Defined Strategy for Multi-lineage Differentiation of Gastric Organoids.- Generation of Transgene-Free Naive Human Induced Pluripotent Stem Cells from Somatic Cells Using a Modified Temperature-Sensitive Sendai Virus System.- Skeletal muscle tissue engineering: methods and analysis for the bio-fabrication and validation of a 3D scaffold-free muscle construct.- Preparation of Mesenchymal Stromal Cells-derived Extracellular Vesicles as carriers for Paclitaxel delivery.- Systematic Analysis of Tumor Microenvironment Using IOBR.- Systematic Dissection of Key Driver Perturbation Signatures in Single Cells via ECCITE-seq.- B cell aware analysis of single-cell transcriptomics data.- Combined Lipidomic and Metabolomic Analyses on Cardiac Organoids.- A cell atlas of adult Aedes aegypti midgut revealed by single nucleus/cell RNA sequencing.- Genomic Profiling of Chromatin State Using CUT&Tag.- Identification of Genome-Wide Chromatin Structural Aberration in Cancer by Hi-C analysis.- Mapping stage-specific enhancer dynamics during the specification of human trophoblast lineage.- Preparation of postmortem human formalin fixed paraffin embedded frontal cortex tissue for profiling pyramidal neurons via digital spatial profiling.- Improving Image Quality in 10x Visium Spatial Transcriptomics Using Vispro.- Advanced Image Generation for Cancer and Stem Cell Biology Using Diffusion Models.- Automated Quantification and Morphometric Analysis of Pluripotent Stem Cell Colonies Using ColonyQuant.- Alkaline Phosphatase Staining of Embryonic Stem Cells.- Lentiviral Transduction of Embryonic Stem Cells.- Teratoma Formation and Genomic Profiling Using Multi-omics Approaches.- Wound Healing Assay.- Characterization of the Senescence-Associated Secretory Phenotype in Primary and Induced Pluripotent Stem Cell-Derived Skin Cells via Multiplex Assays.- Decoding Nano-Bio Interactions: Gene Regulatory Networks in Advanced Drug Loading.- Integrative Transcriptomic Network Modeling Coupled with Patient-Derived Validation for Circulating lncRNA Biomarker Discovery in NAFLD: A Comprehensive Workflow.- Enhancing the functionality of human bone marrow-derived mesenchymal stromal cells using signaling modulators.