DNA'Protein Interactions

Filter-Binding Assays<BR>
Peter G. Stockley<BR>
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Electrophoretic Mobility Shift Assays for the Analysis of DNA-Protein Interactions<BR>
Marc-André Laniel, Alain Béliveau, and Sylvain L. Guérin<BR>
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DNase I Footprinting, Benoît Leblanc and Tom Moss. Footprinting with Exonuclease III<BR>
Willi Metzger and Hermann Heumann<BR>
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Hydroxyl Radical Footprinting<BR>
Evgeny Zaychikov, Peter Schickor, Ludmilla Denissova, and Hermann Heumann<BR>
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The Use of Diethyl Pyrocarbonate and Potassium Permanganate as Probes for Strand Separation and Structural Distortions in DNA<BR>
Brenda F. Kahl and Marvin R. Paule<BR>
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Footprinting DNA-Protein Interactions in Native Polyacrylamide Gels by Chemical Nucleolytic Activity of 1,10 -Phenanthroline-Copper<BR>
Athanasios G. Papavassilou<BR>
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Uranyl Photofootprinting<BR>
Peter E. Nielsen<BR>
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Osmium Tetroxide Modification and the Study of DNA-Protein Interactions<BR>
James A. McClellan<BR>
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Determination of a Transcription Factor-Binding Site by Nuclease Protection Footprinting onto Southwestern Blots<BR>
Athanasios G. Papavassilou<BR>
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Diffusible Singlet Oxygen as a Probe of DNA Deformation<BR>
Malcolm Buckle and Andrew A. Travers<BR>
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Ultraviolet-Laser Footprinting<BR>
Johannes Geiselmann and Frederic Boccard<BR>
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In Vivo DNA Analysis<BR>
Régen Drouin, Jean-Philippe Therrien, Martin Angers, and Stéphane Ouellet<BR>
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Identification of Protein-DNA Contacts with Dimethyl Sulfate: Methylation Protection and Methylation Interference<BR>
Peter E. Shaw and A. Francis Stewart<BR>
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Ethylation Interference<BR>
Iain W. Manfield and Peter G. Stockley<BR>
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Hydroxyl Radical Interference<BR>
Peter Schickor, Evgeny Zaychiko, and Hermann Heumann<BR>
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Identification of Sequence-Specific DNA-Binding Proteins by Southwestern Blotting<BR>
Simon Labbé, Gale Stewart, Olivier LaRochelle, Guy G. Poirier, and Carl Séguin<BR>
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A Competition Assay for DNA Binding Using the Fluorescent Probe ANS<BR>
Ian Taylor and G. Geoff Kneale<BR>
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Site-Directed Cleavage of DNA by Linker Histone Protein-Fe(II) EDTA Conjugates<BR>
David R. Chafin and Jeffrey J. Hayes<BR>
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Nitration of Tyrosine Residues in Protein-Nucleic Acid Complexes<BR>
Simon E. Plyte<BR>
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Chemical Modification of Lysine by Reductive Methylation: A Probe of Residues Involved in DNA Binding<BR>
Ian A. Taylor and Michelle Webb<BR>
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Limited Proteolysis of Protein-Nucleic Acid Complexes<BR>
Simon E. Plyte and G. Geoff Kneale<BR>
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Ultraviolet Crosslinking of DNA-Protein Complexes Via 8-Azidoadenine<BR>
Rainer Meffert, Klaus Dose, Gabriele Rathgeber, and Hans-Jochen Schäfer<BR>
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Site-Specific Protein-DNA Photocrosslinking: Analysis of Bacterial Transcription Initiation Complexes<BR>
Nikolai Naryshkin, Younggyu Kim, Qianping Dong, and Richard H. Ebright<BR>
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Site-Directed DNA Photoaffinity Labeling of RNA Polymerase II Transcription Complexes<BR>
Jim Persinger and Blaine Bartholomew<BR>
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Use of Site-Specific Protein-DNA Photocrosslinking to Analyze the Molecular Organization of the RNA Polymerase II Initiation Complex<BR>
François Robert and Benoît Coulombe<BR>
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UV Laser-Induced Protein-DNA Crosslinking<BR>
Stefan I. Dimitrov and Tom Moss<BR>
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Plasmid Vectors for the Analysis of Protein-Induced DNA Bending<BR>
Christian Zwieb and Sankar Adhya<BR>
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Engineering Nucleic Acid-Binding Proteins by Phage Display<BR>
Mark Isalan and Yen Choo<BR>
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Genetic Analysis of DNA-Protein Interactions Using a Reporter Gene Assay in Yeast<BR>
David R. Setzer, Deborah B. Schulman, and Michael J. Bumbulis<BR>
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Assays for Transcription Factor Activity<BR>
Virgil Rhodius, Nigel Savery, Annie Kolb, and Stephen Busby<BR>
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Assay of Restriction Endonucleases Using Oligonucleotides<BR>
Bernard A. Connolly, Hsiao-Hui Liu, Damian Parry, Lisa E. Engler, Michael R. Kurpiewski, and Linda Jen-Jacobson<BR>
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Analysis of DNA-Protein Interactions by Intrinsic Fluorescence<BR>
Mark L. Carpenter, Anthony W. Oliver and G. Geoff Kneale<BR>
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Circular Dichroism for the Analysis of Protein-DNA Interactions<BR>
Mark L. Carpenter, Anthony W. Oliver, and G. Geoff Kneale<BR>
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Calorimetry of Protein-DNA Complexes and Their Components<BR>
Christopher M. Read and Ilian Jelesarov<BR>
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Surface Plasmon Resonance Applied to DNA-Protein Complexes<BR>
Malcolm Buckle<BR>
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Reconstitution of Protein-DNA Complexes for Crystallization<BR>
Rachel M. Conlin and Raymond S. Brown<BR>
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Two-Dimensional Crystallization of Soluble Protein Complexes<BR>
Patrick Schultz, Nicolas Bischler, and Luc Lebeau<BR>
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Atomic Force Microscopy of DNA and Protein-DNA Complexes Using Functionalized Mica Substrates<BR>
Yuri L. Lyubchenko, Alexander A. Gall, and Luda S. Shlyakhtenko<BR>
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Electron Microscopy of Protein-Nucleic Acid Complexes: Uniform Spreading of Flexible Complexes, Staining with a Uniform Thin Layer of Uranyl Acetate and Determining Helix Handedness<BR>
Carla W. Gray<BR>
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Scanning Transmission Electon Microscopy of DNA-Protein Complexes<BR>
Joseph S. Wall and Martha N. Simon<BR>
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Determination of Nuleic Acid Recognition Sequences by SELEX<BR>
Philippe Bouvet<BR>
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High DNA-Protein Crosslinking Yield with Two-Wavelength Femtosecond Laser Irradiation<BR>
Christoph Russmann, Rene Beigang, and Miguel Beato<BR>
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Appendices: I. EMSA/Gel Shift Conditions. <BR>
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II. DNA-Modification/Cleavage Reagents<BR>
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Index.