Expression Profiling of Human Tumors

Part I. Introduction

Introduction: Present and Potential Impact of Expression Profiling Studies of Human Tumors
Marc Ladanyi and William L. Gerald

Part II. Technical Aspects

cDNA Microarrays
Paul S. Meltzer

Oligonucleotide Microarrays
Marina Chicurel and Dennise Dalma-Weiszhausz

Serial Analysis of Gene Expression (SAGE) in Cancer Research
C. Marcelo Aldaz

Tissue Arrays
Cyrus V. Hedvat

Microarray Data Analysis: Cancer Genomics and Molecular Pattern Recognition
Pablo Tamayo and Sridhar Ramaswamy

The Role of Tumor Banking and Related Informatics
Stephen J. Qualman, Jay Bowen, Sandra Brewer-Swartz, and Mary France

Part III. Applications

Characterization of Gene Expression Patterns for Classification of Breast Carcinomas
Irene L. Andrulis, Nalan Gokgoz, and Shelley B. Bull

Microarray Analysis of Colorectal Cancer
Daniel A. Notterman, Carrie J. Shawber, and Wei Liu

Gene Expression Analysis of Prostate Carcinoma
William L. Gerald

Classification of Human Lung Carcinomas by mRNA Expression Profiling
Arindam Bhattacharjee and Matthew Meyerson

Molecular Profiling of Bladder Cancer Using High-Throughput DNA Microarrays
Marta Sánchez-Carbayo and Carlos Cordon-Cardo

Gene Expression Profiling of Renal Cell Carcinoma and its Clinical Implications
Masayuki Takahashi and Bin Tean Teh

Expression Profiling of Pancreatic Ductal Adenocarcinoma
Christine A. Iacobuzio-Donahue and Ralph H. Hruban

Gene Expression in Ovarian Carcinoma
Garret M. Hampton

Classification of Pediatric Tumors Using DNA Microarrays
Javed Khan and Marc Ladanyi

Transcriptomes of Soft Tissue Tumors: Pathologic and Clinical Implications
Sabine C. Linn, Rob B. West, and Matt van de Rijn

Gene Expression Profiling inLymphoid Malignancies
Wing C. Chan and Louis M. Staudt

Gene Expression Profiling of Brain Tumors
Meena K. Tanwar and Eric C. Holland

Expression Profiling of Bone Tumors
Deborah Schofield, Daniel Wai, and Timothy J. Triche

Index