Computational Methods for SNPs and Haplotype Inference

Trisomic Phase Inference.- Trisomic Phase Inference.- An Overview of Combinatorial Methods for Haplotype Inference.- A Survey of Computational Methods for Determining Haplotypes.- Haplotype Inference and Its Application in Linkage Disequilibrium Mapping.- Inferring Piecewise Ancestral History from Haploid Sequences.- Haplotype Blocks in Small Populations.- Simulating a Coalescent Process with Recombination and Ascertainment.- Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data.- Parametric Bootstrap for Assessment of Goodness of Fit of Models for Block Haplotype Structure.- A Coalescent-Based Approach for Complex Disease Mapping.- Abstracts.- Haplotyping as Perfect Phylogeny.- Exhaustive Enumeration and Bayesian Phase Inference.- How Does Choice of Polymorphism Influence Estimation of LD and Mapping?.- Haplotype Inference in Random Population Samples.- Bayesian Methods for Statistical Reconstruction of Haplotypes.- Combinatorial Approaches to Haplotype Inference.- Large Scale Recovery of Haplotypes from Genotype Data Using Imperfect Phylogeny.- Haplotype Inference and Haplotype Information.- Multi-locus Linkage Disequilibrium and Haplotype-Based Tests of Association.- The Pattern of Polymorphism on Human Chromosome 21.- Use of a Local Approximation to the Ancestral Recombination Graph for Fine Mapping Disease Genes.- Insights into Recombination from Patterns of Linkage Disequilibrium.- Joint Bayesian Estimation of Mutation Location and Age Using Linkage Disequilibrium.- Evolutionary-Based Association Analysis Using Haplotype Data.- Inferring Piecewise Ancestral History from Haploid Sequences.- Testing for Differences in Haplotype Frequencies in Case-Control Studies.- Haplotypes, Hotspots, and a Multilocus Model for Linkage Disequilibrium.- Dynamic Programming Algorithms for Haplotype Block Partition and Applications to Association Studies.- Genome Sharing in Small Populations.- Patterns of Linkage Disequilibrium across Human Chromosomes 6, 21, AND 22.- A Software System for Automated and Visual Analysis of Functionally Annotated Haplotypes.- Assessment of Goodness of Fit of Models for Block Haplotype Structure.